PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111658.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 254aa    MW: 28647.5 Da    PI: 6.7165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-0578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C +sF ++  L  H++ H
  XP_009111658.1  78 FSCNYCQRSFYSSQALGGHQNAH 100
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-773105No hitNo description
Gene3DG3DSA:3.30.160.605.3E-476104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.71878105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNISREKQLP SDPSCMASST AFPCQDSLNQ RQEQSFKDEE ADVNDSTQEL NLLDCIDTSI  60
DVNQSYNGSI TPTEHKLFSC NYCQRSFYSS QALGGHQNAH KRERTLAKRA QRMGASASAF  120
GHPYGFSPVS FHGQYNNRSL EIQAHSMSHN ISSYNGFGDH YGHINWSRLP LDQQPAIGKL  180
SSVDHFHNHH QHHHQMMMMM DPSVTTRSNN MARSSSNIGR NLVGSLTLEQ WQGDEGLFST  240
IQEEKQNLDL SLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111658.10.0PREDICTED: zinc finger protein 3-like
RefseqXP_013660873.10.0PREDICTED: zinc finger protein 3-like
SwissprotQ392621e-106ZFP3_ARATH; Zinc finger protein 3
TrEMBLA0A078G5110.0A0A078G511_BRANA; BnaA09g04660D protein
TrEMBLM4F6260.0M4F626_BRARP; Uncharacterized protein
STRINGBra036535.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-107zinc finger protein 3